Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
TGCT rs11976354 chr7:127783118 G/A 1.78E-9 134 42.27 37.53 12.55 KM Plot
TGCT rs11979599 chr7:127788219 T/C 1.8E-9 134 43.68 37.32 12.55 KM Plot
TGCT rs12109048 chr5:74598434 C/T 1.62E-5 130 45.1 28.67 9.27 KM Plot
TGCT rs12123141 chr1:157625919 A/G 1.01E-8 134 20.6 72.23 37.95 KM Plot
TGCT rs12153987 chr6:42589913 C/T 2.74E-8 133 37.95 50.8 20.6 KM Plot
TGCT rs12154567 chr7:53294282 G/T 3.28E-13 130 41.33 43.53 8.6 KM Plot
TGCT rs12177541 chr6:156990818 A/G 0.000115 133 41.27 60.63 59.27 KM Plot
TGCT rs12244052 chr10:1103266 G/A 1.75E-13 133 41.27 70.63 17.1 KM Plot
TGCT rs12247779 chr10:1107957 T/G 1.75E-13 133 42.03 70.63 17.1 KM Plot
TGCT rs12247818 chr10:1110464 G/A 1.75E-13 133 42.03 70.63 17.1 KM Plot
TGCT rs12250408 chr10:8631466 G/A 3.88E-7 133 43.68 33.53 17.58 KM Plot
TGCT rs12260818 chr10:27561956 C/A 6.98E-7 132 42.18 46.3 20.6 KM Plot
TGCT rs12268949 chr10:1104257 A/G 1.75E-13 133 41.27 70.63 17.1 KM Plot
TGCT rs12298615 chr12:129286756 G/A 1.54E-5 133 40.57 44.28 29.53 KM Plot
TGCT rs12311303 chr12:129301592 C/T 1.39E-5 134 41.33 44.28 29.53 KM Plot